Analysis of ImmGen Consortium ATAC data using chromVAR

# Performed by Caleb Lareau, 2 October

Load data

Update sample names from lib -> cell name

These are the samples that didn’t pass bias filtering

## [1] "MC.heparinase.PC_3" "MC.heparinase.PC_4"

All peaks passed the filter_peaks function

Get motifs; compute deviations.

View plots of variable TFs and deviation heatmap

View TF x Sample clusters

View clusters of TF

View clusters of samples