Analysis of ImmGen Consortium ATAC data using chromVAR
# Performed by Caleb Lareau, 2 October
Load data
Update sample names from lib -> cell name
These are the samples that didn’t pass bias filtering
## [1] "MC.heparinase.PC_3" "MC.heparinase.PC_4"
All peaks passed the filter_peaks function
Get motifs; compute deviations.
View plots of variable TFs and deviation heatmap

View TF x Sample clusters